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  5. Ore_g18786

Ore_g18786 (ATRAB1A, ATRABD2B, RAB1A)


Aliases : ATRAB1A, ATRABD2B, RAB1A

Description : D-class RAB GTPase & original description: none


Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g18786
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AT4G17530 RAB1C, ATRAB1C, ATRABD2C RAB GTPase homolog 1C 0.02 OrthoFinder output from all 47 species
Aop_g09984 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g23257 ATRAB1B, RABD2A,... D-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Cre12.g560150 ATRAB1A, ATRABD2B, RAB1A Vesicle trafficking.regulation of membrane tethering and... 0.01 OrthoFinder output from all 47 species
Gb_01493 ATRAB1B, RABD2A,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os05g01490.1 RAB1C, ATRAB1C,... D-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Smo228158 RAB1C, ATRAB1C, ATRABD2C Vesicle trafficking.regulation of membrane tethering and... 0.02 OrthoFinder output from all 47 species
Zm00001e027735_P001 RAB1C, ATRAB1C,... D-class RAB GTPase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0045927 positive regulation of growth IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 62 222
No external refs found!