Aliases : XRN3, AtXRN3
Description : exoribonuclease *(RAT1/XRN2) & original description: none
Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00024460 | XRN3, AtXRN3,... | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| AT1G54490 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease 4 | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g17886 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g15103 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Als_g21055 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g26061 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g06747 | XRN3, AtXRN3 | exoribonuclease *(XRN4) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g13654 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene45036.t1 | XRN3, AtXRN3,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene67537.t1 | EIN5, AIN1,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene67539.t1 | XRN3, AtXRN3,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0149.g053258 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: CDS=205-3336 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0236.g059553 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: CDS=1782-4652 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g15355 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.30G049400.1 | XRN3, AtXRN3,... | exoribonuclease *(RAT1/XRN2) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
| Cre06.g280050 | XRN3, AtXRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g07777 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_09607 | XRN3, AtXRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g65220.1 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g58060.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g50910 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06753 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g19229 | EIN5, AIN1, XRN4, ATXRN4 | exoribonuclease *(XRN4) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430844g0010 | XRN3, AtXRN3 | exoribonuclease (RAT1/XRN2) | 0.02 | OrthoFinder output from all 47 species | |
| MA_17503g0010 | XRN3, AtXRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g08820.1 | XRN3, AtXRN3 | exoribonuclease (RAT1/XRN2) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g13176 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g19704 | EIN5, AIN1, XRN4, ATXRN4 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012142 | XRN3, AtXRN3 | exoribonuclease *(RAT1/XRN2) & original description: CDS=244-3387 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g12064 | No alias | exoribonuclease *(RAT1/XRN2) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g38845 | No alias | exoribonuclease *(XRN4) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc04g049010.3.1 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc04g081280.3.1 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.02 | OrthoFinder output from all 47 species | |
| Solyc12g089280.2.1 | XRN3, AtXRN3,... | exoribonuclease (RAT1/XRN2) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e011879_P001 | EIN5, AIN1,... | EBF-modulating exoribonuclease (EIN5/XRN4).... | 0.07 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0008270 | zinc ion binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | HCCA |
| MF | GO:0004252 | serine-type endopeptidase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| No external refs found! |
