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  5. Aev_g16440

Aev_g16440 (HAF01, HAC13, TAF1, HAF1, GTD1)


Aliases : HAF01, HAC13, TAF1, HAF1, GTD1

Description : component *(HAF/TAF1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0003088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g16440
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder output from all 47 species
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.03 OrthoFinder output from all 47 species
AT3G19040 TAF1B, TAF1, HAF2 histone acetyltransferase of the TAFII250 family 2 0.02 OrthoFinder output from all 47 species
Adi_g086241 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ala_g25268 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Als_g30745 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aop_g13570 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011150 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.20G008000.1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000632.12 GTE3 No description available 0.02 OrthoFinder output from all 47 species
Dcu_g03217 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
GSVIVT01020528001 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.02 OrthoFinder output from all 47 species
Lfl_g06767 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ppi_g32049 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Sam_g37859 No alias component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Spa_g55054 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Tin_g11474 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Zm00001e037464_P001 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR009067 TAF_II_230-bd 12 55
IPR022591 TAF1_HAT_dom 610 1182
IPR001487 Bromodomain 1865 1940
IPR000626 Ubiquitin-like_dom 695 766
No external refs found!