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  5. Ore_g20425

Ore_g20425


Description : pectin methylesterase & original description: none


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g20425

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00027p00247950 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AT2G36700 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G36710 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G07410 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G07420 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G47500 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g011343 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g10719 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10720 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18531 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20723 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11400 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01243 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20602 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16842.t2 Aspi01Gene16842 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene31942.t1 Aspi01Gene31942 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49142.t1 Aspi01Gene49142 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59355.t1 Aspi01Gene59355 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene71978.t1 Aspi01Gene71978 pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0002.g001228 No alias pectin methylesterase & original description: CDS=1-1122 0.03 OrthoFinder output from all 47 species
Ceric.10G069000.1 Ceric.10G069000 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.37G019200.1 Ceric.37G019200 pectin methylesterase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g09998 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25225 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015290001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 OrthoFinder output from all 47 species
GSVIVT01015852001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 OrthoFinder output from all 47 species
Gb_01460 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Gb_32012 QRT1 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Gb_39595 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_10428207g0020 No alias Probable pectinesterase 53 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_112715g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_16389g0020 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
MA_181657g0020 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_19196g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
MA_87592g0010 ATPE11, PE11 pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp3g01170.1 No alias pectin methylesterase 0.02 OrthoFinder output from all 47 species
Mp5g03920.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Mp5g03930.1 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Msp_g42451 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13329 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26499 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g01612 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20523 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05067 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g24799 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g25901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59766 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60345 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010091 No alias pectin methylesterase & original description: CDS=1-882 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016132 No alias pectin methylesterase & original description: CDS=1-684 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0207.g025813 No alias pectin methylesterase & original description: CDS=1-1236 0.02 OrthoFinder output from all 47 species
Sam_g11685 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16125 No alias EC_3.1 hydrolase acting on ester bond & original... 0.05 OrthoFinder output from all 47 species
Sam_g37525 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g38210 No alias EC_3.1 hydrolase acting on ester bond & original... 0.02 OrthoFinder output from all 47 species
Smo165098 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
Solyc01g079180.4.1 Solyc01g079180 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Tin_g35486 No alias pecTin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002891_P001 Zm00001e002891 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Zm00001e033546_P001 Zm00001e033546 pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 2 285
No external refs found!