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  5. Ore_g23541

Ore_g23541


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g23541

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Adi_g047468 LPA66 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101108 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04417 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05671 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14142 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34036.t1 CRR22, Aspi01Gene34036 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0216.g058493 No alias not classified & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species
Azfi_s1707.g105997 No alias not classified & original description: CDS=1-2574 0.03 OrthoFinder output from all 47 species
Cba_g32940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G063700.1 Ceric.10G063700 not classified & original description: pacid=50612924... 0.05 OrthoFinder output from all 47 species
Dac_g09563 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g05493 OTP82 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07768 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15843 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22114 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g25598 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g02200.1 CRR22, LOC_Os06g02200 RNA editing factor (CRR22) 0.03 OrthoFinder output from all 47 species
Len_g10885 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17338 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18289 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18921 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g17268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12690 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014790 No alias not classified & original description: CDS=1-2049 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021978 No alias not classified & original description: CDS=1-2700 0.04 OrthoFinder output from all 47 species
Sam_g08652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15522 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g23897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo107700 CRR22 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.03 OrthoFinder output from all 47 species
Zm00001e038850_P001 EMB2758, Zm00001e038850 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 224 270
IPR002885 Pentatricopeptide_repeat 425 473
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 325 372
IPR002885 Pentatricopeptide_repeat 526 575
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 633 660
IPR002885 Pentatricopeptide_repeat 299 320
IPR002885 Pentatricopeptide_repeat 97 117
No external refs found!