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  5. Ore_g28177

Ore_g28177


Description : component *(CAP-H) of condensin I complex & original description: none


Gene families : OG0005098 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005098_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g28177
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00055930 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.02 OrthoFinder output from all 47 species
Als_g31312 No alias component *(CAP-H) of condensin I complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g08545 No alias component *(CAP-H) of condensin I complex & original... 0.05 OrthoFinder output from all 47 species
Ceric.07G099800.1 Ceric.07G099800 component *(CAP-H) of condensin I complex & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021462.43 No alias Cell cycle.mitosis and meiosis.chromatin... 0.01 OrthoFinder output from all 47 species
Dcu_g36452 No alias component *(CAP-H) of condensin I complex & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01030475001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder output from all 47 species
Gb_02904 No alias component CAP-H of condensin I complex 0.02 OrthoFinder output from all 47 species
LOC_Os01g34870.1 LOC_Os01g34870 component CAP-H of condensin I complex 0.04 OrthoFinder output from all 47 species
Lfl_g18514 No alias component *(CAP-H) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
MA_98643g0010 No alias component CAP-H of condensin I complex 0.02 OrthoFinder output from all 47 species
Mp1g27450.1 No alias component CAP-H of condensin I complex 0.01 OrthoFinder output from all 47 species
Nbi_g03738 No alias component *(CAP-H) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Ppi_g03206 No alias component *(CAP-H) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Solyc07g049680.4.1 Solyc07g049680 component CAP-H of condensin I complex 0.05 OrthoFinder output from all 47 species
Spa_g12373 No alias component *(CAP-H) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Spa_g51155 No alias component *(CAP-H) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g04131 No alias component *(CAP-H) of condensin I complex & original... 0.02 OrthoFinder output from all 47 species
Zm00001e020787_P001 Zm00001e020787 component CAP-H of condensin I complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEA Interproscan
BP GO:0007076 mitotic chromosome condensation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR022816 Condensin_barren_su2 569 679
IPR022816 Condensin_barren_su2 7 563
No external refs found!