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  5. Ore_g28532

Ore_g28532 (NFD2, HMG BETA 1, HMGB2, NFD02)


Aliases : NFD2, HMG BETA 1, HMGB2, NFD02

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g28532
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00070550 HMGB6,... High mobility group B protein 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g007317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ala_g04363 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g13580 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aop_g23124 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Aop_g38218 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aop_g48668 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g20756 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g44453 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01034361001 HMGB6 High mobility group B protein 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_05796 NFD2, HMG BETA... High mobility group B protein 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_23297 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_34784 HMGB6 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g01100.1 HMGB6, LOC_Os08g01100 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g16826 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Len_g21317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Len_g30940 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g24536 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
MA_86565g0010 HMGB6 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g26685 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27294 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g31468 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g40555 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Solyc04g008820.3.1 HMGB6, Solyc04g008820 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g10432 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Spa_g15059 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Spa_g44851 NFD03, HMGB3, NFD3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00083 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Tin_g45467 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 76 145
No external refs found!