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  5. Ore_g28590

Ore_g28590


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g28590

Target Alias Description ECC score Gene Family Method Actions
AT2G35910 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT2G42350 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G09110 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g051621 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g03039 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aob_g03297 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g00290 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14350.t1 Aspi01Gene14350 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g29676 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.38G066400.1 Ceric.38G066400 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.87 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g01132 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dde_g24472 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01013145001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
GSVIVT01016564001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01022306001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os01g53500.1 LOC_Os01g53500 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g05570.1 LOC_Os03g05570 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os05g45060.1 LOC_Os05g45060 RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g42540.1 LOC_Os12g42540 RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g27111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8693914g0010 No alias RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Nbi_g12750 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Solyc05g010170.2.1 XERICO, Solyc05g010170 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc08g082680.3.1 Solyc08g082680 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g094690.1.1 Solyc12g094690 RING-H2 finger protein ATL8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g07427 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Spa_g53569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12610 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e017960_P001 RHA3A, Zm00001e017960 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 102 145
No external refs found!