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  5. Ore_g29173

Ore_g29173


Description : not classified & original description: none


Gene families : OG0000498 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000498_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g29173
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Ala_g34442 IRX6, COBL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78570 COBL2 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Ceric.33G061400.1 COB, Ceric.33G061400 regulatory protein *(COB) of cellulose-hemicellulose... 0.03 OrthoFinder output from all 47 species
Dac_g00727 COB regulatory protein *(COB) of cellulose-hemicellulose... 0.02 OrthoFinder output from all 47 species
GSVIVT01035050001 SEB1, COBL7, ATSEB1 Cell wall.cellulose.synthesis.cellulose microfibrils and... 0.02 OrthoFinder output from all 47 species
LOC_Os05g32110.1 COB, LOC_Os05g32110 COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
MA_10426946g0010 COBL8 COBRA-like protein 8 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10426946g0030 COBL10 COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
Solyc01g065530.3.1 SEB1, COBL7,... COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species
Zm00001e001386_P001 SEB1, COBL7,... COB cellulose microfibrils and hemicellulose interaction protein 0.03 OrthoFinder output from all 47 species
Zm00001e038043_P001 IRX6, COBL4,... COB cellulose microfibrils and hemicellulose interaction protein 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR006918 COBRA_pln 62 125
No external refs found!