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  5. Ore_g31219

Ore_g31219


Description : RNA chaperone *(RZ1) & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g31219
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 OrthoFinder output from all 47 species
Aev_g08733 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene04854.t1 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19057.t1 Aspi01Gene19057 RNA chaperone *(RZ1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01007865001 GR-RBP3 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
MA_10428777g0010 CCR2, ATGRP7,... Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba... 0.03 OrthoFinder output from all 47 species
Ore_g00084 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g05645 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07233 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g07272 CCR2, ATGRP7,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g26664 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44020 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44021 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c4_6610V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.01 OrthoFinder output from all 47 species
Spa_g20439 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04956 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR001878 Znf_CCHC 125 139
No external refs found!