Ore_g34477 (ATPUB17, PUB17)

Aliases : ATPUB17, PUB17

Description : not classified & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g34477

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	PUB15,...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00006p00267930	evm_27.TU.AmTr_v1...	U-box domain-containing protein 19 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00086p00031680	evm_27.TU.AmTr_v1...	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00153p00035720	ATPUB17, PUB17,...	U-box domain-containing protein 1 OS=Medicago truncatula	0.07	OrthoFinder output from all 47 species
AT1G10560	PUB18, ATPUB18	plant U-box 18	0.03	OrthoFinder output from all 47 species
Adi_g017517	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g054040	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g06664	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07222	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g16049	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43158.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0011.g012763	PUB12, AtPUB12	not classified & original description: CDS=1-549	0.03	OrthoFinder output from all 47 species
Ceric.10G010200.1	Ceric.10G010200	not classified & original description: pacid=50612946...	0.02	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.04	OrthoFinder output from all 47 species
Dac_g08480	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g11561	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g23493	PUB18, ATPUB18	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g35977	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g39000	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04978	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17103	PUB13, ATPUB13	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
Gb_24091	PUB9, ATPUB9	U-box domain-containing protein 14 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10431607g0010	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
Msp_g35257	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g02927	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g38088	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g20708	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g28799	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g35149	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Pir_g01986	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g02760	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17953	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g26460	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Smo113592	No alias	U-box domain-containing protein 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Smo420513	No alias	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	OrthoFinder output from all 47 species
Spa_g05552	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g24085	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Zm00001e019429_P001	Zm00001e019429	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	435	464
IPR003613	Ubox_domain	300	371

External Links

No external refs found!

Ore_g34477 (ATPUB17, PUB17)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation