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  5. Ore_g34566

Ore_g34566


Description : not classified & original description: none


Gene families : OG0006520 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006520_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g34566

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00229710 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH8 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Aev_g20790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09060 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os01g15300.1 LOC_Os01g15300 Zinc finger CCCH domain-containing protein 4 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Ppi_g22250 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 253 376
IPR019446 BMT5-like 837 985
IPR011545 DEAD/DEAH_box_helicase_dom 16 167
IPR000571 Znf_CCCH 727 749
IPR000571 Znf_CCCH 752 775
No external refs found!