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  5. Ore_g40488

Ore_g40488


Description : nucleocytoplasmic import karyopherin *(IMB1) & original description: none


Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g40488

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00188470 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
AT5G53480 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g019484 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Adi_g057720 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Adi_g102316 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Adi_g102317 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Als_g03885 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Als_g32943 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g02382 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Cre01.g034000 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Ehy_g09212 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Gb_36673 No alias IMB1 nucleocytoplasmic import karyopherin 0.03 OrthoFinder output from all 47 species
Len_g05449 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g34606 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Msp_g12557 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g22836 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.01 OrthoFinder output from all 47 species
Pir_g08379 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g08124 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g11141 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Smo124593 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Smo185511 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
Solyc03g082940.3.1 Solyc03g082940 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
MF GO:0031267 small GTPase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 11 90
No external refs found!