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  5. Ore_g42900

Ore_g42900 (LBD20)


Aliases : LBD20

Description : AS2/LOB-type transcription factor & original description: none


Gene families : OG0000114 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g42900
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00187850 LBD2,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AT2G28500 LBD11 LOB domain-containing protein 11 0.02 OrthoFinder output from all 47 species
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.02 OrthoFinder output from all 47 species
Ala_g15807 AS2 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g27571 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g00489 LOB AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07544 LBD19 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09772 LBD15, ASL11 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68836 LBD20 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12703.t1 LOB, Aspi01Gene12703 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0225.g058902 LBD4 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.02G060200.1 LBD15, ASL11,... AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.14G090000.1 LBD20, Ceric.14G090000 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.20G046600.1 Ceric.20G046600 not classified & original description: pacid=50566224... 0.02 OrthoFinder output from all 47 species
Dac_g45227 LBD4 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46319 LBD20 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01003546001 LBD10 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01003547001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
GSVIVT01004323001 ASL1, LBD36 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01006269001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
GSVIVT01032752001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
Gb_14010 LBD20 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_21109 LBD4 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_21467 LBD22 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Gb_29853 LBD4 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Gb_38119 LBD4 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Gb_39343 LBD20 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g05500.1 LBD29, ASL16,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Len_g55694 LBD20 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_126761g0010 LBD20 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_16891g0010 LOB transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_41152g0010 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
MA_77200g0010 LBD4 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Mp4g02620.1 LBD12, ASL5, PCK1 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp4g10500.1 LBD25 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp5g17820.1 LBD25 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp7g00650.1 ASL1, LBD36 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mp7g14810.1 LBD25 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Mpzg01450.1 No alias transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Msp_g44922 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40723 AS2 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g42913 LBD27, SCP AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g09676 LBD20 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo59642 LBD20 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 OrthoFinder output from all 47 species
Solyc01g098220.2.1 LBD20, Solyc01g098220 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc02g069440.3.1 LBD4, Solyc02g069440 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc03g095940.1.1 LBD21, Solyc03g095940 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Solyc11g008830.2.1 AS2, Solyc11g008830 transcription factor (AS2/LOB) 0.01 OrthoFinder output from all 47 species
Solyc12g010810.1.1 LBD2, Solyc12g010810 transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e026736_P001 LBD15, ASL11,... transcription factor (AS2/LOB) 0.02 OrthoFinder output from all 47 species
Zm00001e031510_P001 LBD12, ASL5,... transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Zm00001e042449_P001 Zm00001e042449 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 57 158
No external refs found!