Ore_g42999 (ARF6)

Aliases : ARF6

Description : ARF-type transcription factor & original description: none

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g42999
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AT5G20730	TIR5, MSG1,...	Transcriptional factor B3 family protein /...	0.02	OrthoFinder output from all 47 species
AT5G62000	HSS, ARF1-BP, ARF2, ORE14	auxin response factor 2	0.03	OrthoFinder output from all 47 species
Adi_g088539	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g103007	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020904.93	No alias	No description available	0.04	OrthoFinder output from all 47 species
Dcu_g36299	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g46643	HSS, ARF1-BP, ARF2, ORE14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01023149001	ARF1	RNA biosynthesis.transcriptional activation.B3...	0.04	OrthoFinder output from all 47 species
Lfl_g18657	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16843	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g19932	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g26224	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g39909	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g51872	No alias	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e018761_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	128	229
IPR010525	ARF_dom	254	336

External Links

No external refs found!

Ore_g42999 (ARF6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation