1. Home
  2. Species
  3. Ophioglossum reticulatum
  4. Sequence
  5. Ore_g43153

Ore_g43153 (AtLa1, La1)


Aliases : AtLa1, La1

Description : nascent RNA chaperone *(LA) & original description: none


Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g43153

Target Alias Description ECC score Gene Family Method Actions
AT4G32720 AtLa1, La1 La protein 1 0.04 OrthoFinder output from all 47 species
Ala_g01557 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08492 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.26G010200.1 AtLa1, La1,... nascent RNA chaperone *(LA) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g09267 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01035666001 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os04g42010.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species
Pir_g00573 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g068310.3.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species
Zm00001e015074_P001 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species
Zm00001e041151_P001 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR014886 La_xRRM 330 423
IPR006630 La_HTH 14 84
IPR000504 RRM_dom 123 175
No external refs found!