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  5. Spa_g01672

Spa_g01672 (At-RSZ22a, RSZ22a)


Aliases : At-RSZ22a, RSZ22a

Description : RNA splicing factor *(RSZ21/22) & original description: none


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g01672

Target Alias Description ECC score Gene Family Method Actions
AT2G24590 At-RSZ22a, RSZ22a RNA recognition motif and CCHC-type zinc finger domains... 0.04 OrthoFinder output from all 47 species
AT4G31580 RSZ22, At-RSZ22,... serine/arginine-rich 22 0.03 OrthoFinder output from all 47 species
Adi_g020430 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22485 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20627 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Cre09.g408200 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dde_g15858 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033172001 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_20020 RSZ21, At-RSZ21,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Pir_g18145 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g66414 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g13208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo68846 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Zm00001e015077_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e016090_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e023726_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e036288_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 61
IPR001878 Znf_CCHC 82 96
No external refs found!