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  5. Spa_g03340

Spa_g03340 (HVA22J)


Aliases : HVA22J

Description : not classified & original description: none


Gene families : OG0000762 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000762_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g03340
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AT1G19950 HVA22H HVA22-like protein H (ATHVA22H) 0.02 OrthoFinder output from all 47 species
AT2G36020 HVA22J HVA22-like protein J 0.04 OrthoFinder output from all 47 species
Als_g52818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g38302 HVA22J not classified & original description: none 0.17 OrthoFinder output from all 47 species
Aspi01Gene25846.t1 HVA22J, Aspi01Gene25846 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene47209.t1 Aspi01Gene47209 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0034.g025377 No alias not classified & original description: CDS=275-1012 0.03 OrthoFinder output from all 47 species
Azfi_s0084.g039044 No alias not classified & original description: CDS=964-1794 0.02 OrthoFinder output from all 47 species
Ceric.20G054100.1 Ceric.20G054100 not classified & original description: pacid=50566693... 0.22 OrthoFinder output from all 47 species
Dcu_g09540 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Ehy_g03146 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g36340.1 LOC_Os09g36340 Putative HVA22-like protein g OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os12g06180.1 HVA22J, LOC_Os12g06180 HVA22-like protein j OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g05504 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Lfl_g19017 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g19018 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g13896 No alias not classified & original description: none 0.23 OrthoFinder output from all 47 species
Ppi_g61961 HVA22J not classified & original description: none 0.12 OrthoFinder output from all 47 species
Sam_g23612 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Solyc01g007780.4.1 Solyc01g007780 HVA22-like protein i OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc04g081340.3.1 Solyc04g081340 HVA22-like protein i OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR004345 TB2_DP1_HVA22 30 107
No external refs found!