Spa_g03535

Description : component *(uL29c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0004758 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004758_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g03535
Cluster	HCCA: Cluster_90

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00170150	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
AT5G65220	No alias	Ribosomal L29 family protein	0.15	OrthoFinder output from all 47 species
Adi_g021318	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aev_g03513	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ala_g00554	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Als_g34521	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Aob_g00731	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Aop_g32624	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Aspi01Gene69557.t1	Aspi01Gene69557	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Azfi_s0048.g030677	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.13	OrthoFinder output from all 47 species
Cba_g00374	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Ceric.34G037300.1	Ceric.34G037300	component *(uL29c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Cre06.g259850	No alias	No description available	0.08	OrthoFinder output from all 47 species
Dac_g03965	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g13501	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.12	OrthoFinder output from all 47 species
Ehy_g20187	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 47 species
LOC_Os02g51790.1	LOC_Os02g51790	component psRPL29 of large ribosomal subunit proteome	0.12	OrthoFinder output from all 47 species
Len_g04060	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Len_g45621	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Lfl_g16498	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
MA_10268152g0010	No alias	component psRPL29 of large ribosomal subunit proteome	0.05	OrthoFinder output from all 47 species
MA_10431457g0010	No alias	component psRPL29 of large ribosomal subunit proteome	0.11	OrthoFinder output from all 47 species
MA_42151g0010	No alias	component psRPL29 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species
Mp4g10390.1	No alias	component psRPL29 of large ribosomal subunit proteome	0.18	OrthoFinder output from all 47 species
Msp_g08238	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.15	OrthoFinder output from all 47 species
Nbi_g13470	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.11	OrthoFinder output from all 47 species
Ore_g04033	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 47 species
Pir_g11029	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Pp3c15_20650V3.1	Pp3c15_20650	Ribosomal L29 family protein	0.07	OrthoFinder output from all 47 species
Pp3c9_19800V3.1	Pp3c9_19800	Ribosomal L29 family protein	0.05	OrthoFinder output from all 47 species
Ppi_g10973	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008714	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 47 species
Sam_g12929	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Sam_g12930	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.04	OrthoFinder output from all 47 species
Smo85675	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Solyc06g072470.4.1	Solyc06g072470	component psRPL29 of large ribosomal subunit proteome	0.08	OrthoFinder output from all 47 species
Tin_g03662	No alias	component *(uL29c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e023859_P001	Zm00001e023859	component psRPL29 of large ribosomal subunit proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0010206	photosystem II repair	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
MF	GO:0010242	oxygen evolving activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030091	protein repair	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0042549	photosystem II stabilization	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	63	118

External Links

No external refs found!

Spa_g03535

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation