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  5. Spa_g04459

Spa_g04459


Description : component *(uL11) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0001473 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001473_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04459
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00048810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 OrthoFinder output from all 47 species
AMTR_s00148p00026900 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
AT2G37190 No alias Ribosomal protein L11 family protein 0.26 OrthoFinder output from all 47 species
AT3G53430 No alias Ribosomal protein L11 family protein 0.07 OrthoFinder output from all 47 species
AT5G60670 No alias Ribosomal protein L11 family protein 0.12 OrthoFinder output from all 47 species
Adi_g063886 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Adi_g116841 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ala_g29977 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Ala_g38012 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Als_g04839 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.12 OrthoFinder output from all 47 species
Als_g10325 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Als_g50372 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g62499 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g06826 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Aop_g52643 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Aop_g70967 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Azfi_s0004.g008501 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0279.g062260 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ceric.15G067600.1 Ceric.15G067600 component *(uL11) of large ribosomal-subunit (LSU)... 0.17 OrthoFinder output from all 47 species
Ceric.23G070600.1 Ceric.23G070600 component *(uL11) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.27 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 OrthoFinder output from all 47 species
Cre12.g528750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder output from all 47 species
Dac_g01966 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Dcu_g34940 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01016274001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
GSVIVT01025189001 No alias No description available 0.18 OrthoFinder output from all 47 species
GSVIVT01025683001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
LOC_Os02g47140.1 LOC_Os02g47140 component RPL12 of LSU proteome component 0.09 OrthoFinder output from all 47 species
LOC_Os04g50990.1 LOC_Os04g50990 component RPL12 of LSU proteome component 0.22 OrthoFinder output from all 47 species
Len_g13594 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Len_g23627 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g16793 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Lfl_g22014 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
MA_10427147g0010 No alias component RPL12 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Mp3g02020.1 No alias component RPL12 of LSU proteome component 0.23 OrthoFinder output from all 47 species
Msp_g37966 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g38598 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Msp_g45524 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Nbi_g12624 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Pir_g02380 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g02937 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Pir_g37022 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c15_14410V3.1 Pp3c15_14410 Ribosomal protein L11 family protein 0.09 OrthoFinder output from all 47 species
Pp3c6_19290V3.1 Pp3c6_19290 Ribosomal protein L11 family protein 0.04 OrthoFinder output from all 47 species
Ppi_g06745 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g23184 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g24794 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g39860 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g05606 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Sam_g06788 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g40646 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Smo227409 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder output from all 47 species
Solyc06g075180.1.1 Solyc06g075180 component RPL12 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Solyc11g065670.1.1 Solyc11g065670 component RPL12 of LSU proteome component 0.16 OrthoFinder output from all 47 species
Solyc11g069440.1.1 Solyc11g069440 component RPL12 of LSU proteome component 0.23 OrthoFinder output from all 47 species
Tin_g23699 No alias component *(uL11) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e007067_P001 Zm00001e007067 component RPL12 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Zm00001e008316_P001 Zm00001e008316 component RPL12 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Zm00001e023297_P001 Zm00001e023297 component RPL12 of LSU proteome component 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR020783 Ribosomal_L11_C 75 144
IPR020784 Ribosomal_L11_N 15 69
No external refs found!