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  5. Spa_g04508

Spa_g04508 (PUB8, B80)


Aliases : PUB8, B80

Description : E3 ubiquitin ligase *(PUB8) & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04508

Target Alias Description ECC score Gene Family Method Actions
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.03 OrthoFinder output from all 47 species
AT1G60190 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g026489 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05159 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07408 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17483 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23428 PUB12, AtPUB12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44182.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z013500.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Lfl_g04790 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_27512g0010 PUB15 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
MA_468267g0010 PUB9, ATPUB9 U-box domain-containing protein 13 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g00828 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382 No alias not classified & original description: CDS=1-1704 0.03 OrthoFinder output from all 47 species
Solyc09g056450.4.1 PUB9, ATPUB9,... U-box domain-containing protein 9 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g11467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48656 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g48731 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 34 103
No external refs found!