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  5. Spa_g04738

Spa_g04738 (emb1354, CDC48C)


Aliases : emb1354, CDC48C

Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g04738
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Adi_g080379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g33182 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05302 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0115.g046252 emb1354, CDC48C platform ATPase CDC48 & original description: CDS=1-2478 0.03 OrthoFinder output from all 47 species
Dac_g09762 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g03992 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g11340.1 CIP111, LOC_Os11g11340 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp2g13350.1 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Nbi_g36367 CIP111 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13004 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17721 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53020 emb1354, CDC48C not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13901 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g068330.4.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.04 OrthoFinder output from all 47 species
Solyc05g012190.3.1 CDC48B, Solyc05g012190 Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Solyc10g078320.2.1 CIP111, Solyc10g078320 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e021405_P001 CIP111, Zm00001e021405 Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 719 847
IPR003959 ATPase_AAA_core 385 531
IPR031996 NVL2_nucleolin-bd 16 79
IPR041569 AAA_lid_3 870 912
IPR041569 AAA_lid_3 556 590
No external refs found!