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  5. Spa_g05776

Spa_g05776


Description : component *(eS1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g05776

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271660 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder output from all 47 species
AMTR_s00026p00042160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
AT3G04840 No alias Ribosomal protein S3Ae 0.29 OrthoFinder output from all 47 species
AT4G34670 No alias Ribosomal protein S3Ae 0.27 OrthoFinder output from all 47 species
Adi_g060843 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124961 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aev_g03663 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g00907 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g38346 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Als_g37019 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aob_g07768 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g05100 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.2 OrthoFinder output from all 47 species
Aop_g20489 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Aop_g59790 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36093.t1 Aspi01Gene36093 component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0087.g042272 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Azfi_s0171.g055692 No alias not classified & original description: CDS=106-348 0.04 OrthoFinder output from all 47 species
Azfi_s0825.g088224 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.12 OrthoFinder output from all 47 species
Cba_g09637 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cba_g21209 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cba_g69205 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ceric.10G049700.1 Ceric.10G049700 component *(eS1) of small ribosomal-subunit (SSU)... 0.27 OrthoFinder output from all 47 species
Ceric.32G043000.1 Ceric.32G043000 component *(eS1) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020710.39 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from all 47 species
Cre13.g568650 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder output from all 47 species
Dac_g13329 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.19 OrthoFinder output from all 47 species
Dac_g26683 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.11 OrthoFinder output from all 47 species
Dcu_g29549 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Dcu_g40359 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Dde_g00448 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g09698 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g18202 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01018024001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
GSVIVT01021836001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder output from all 47 species
Gb_02289 No alias component RPS3a of SSU proteome 0.19 OrthoFinder output from all 47 species
LOC_Os02g18550.1 LOC_Os02g18550 component RPS3a of SSU proteome 0.13 OrthoFinder output from all 47 species
LOC_Os03g10340.1 LOC_Os03g10340 component RPS3a of SSU proteome 0.25 OrthoFinder output from all 47 species
LOC_Os12g21798.1 LOC_Os12g21798 component RPS3a of SSU proteome 0.15 OrthoFinder output from all 47 species
Len_g11985 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g26102 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_124901g0010 No alias component RPS3a of SSU proteome 0.12 OrthoFinder output from all 47 species
MA_31004g0010 No alias component RPS3a of SSU proteome 0.19 OrthoFinder output from all 47 species
Mp6g02810.1 No alias component RPS3a of SSU proteome 0.29 OrthoFinder output from all 47 species
Msp_g05152 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Msp_g35032 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Nbi_g15011 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ore_g03374 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pir_g08122 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g08877 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g15097 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pir_g60403 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c11_17260V3.1 Pp3c11_17260 Ribosomal protein S3Ae 0.04 OrthoFinder output from all 47 species
Pp3c22_18300V3.1 Pp3c22_18300 Ribosomal protein S3Ae 0.07 OrthoFinder output from all 47 species
Ppi_g08695 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g17698 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ppi_g25805 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0206.g025749 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.16 OrthoFinder output from all 47 species
Sam_g06811 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Sam_g07668 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.15 OrthoFinder output from all 47 species
Sam_g07669 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.17 OrthoFinder output from all 47 species
Sam_g14495 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Sam_g30070 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Smo160008 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Smo271906 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Smo271907 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Solyc03g097900.3.1 Solyc03g097900 component RPS3a of SSU proteome 0.19 OrthoFinder output from all 47 species
Solyc06g072490.3.1 Solyc06g072490 component RPS3a of SSU proteome 0.24 OrthoFinder output from all 47 species
Solyc09g082520.3.1 Solyc09g082520 component RPS3a of SSU proteome 0.05 OrthoFinder output from all 47 species
Tin_g01747 No alias component *(eS1) of small ribosomal-subunit (SSU)... 0.21 OrthoFinder output from all 47 species
Zm00001e038777_P001 Zm00001e038777 component RPS3a of SSU proteome 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001593 Ribosomal_S3Ae 16 221
No external refs found!