Description : component *(cS23) of small plastid ribosomal-subunit proteome & original description: none
Gene families : OG0003343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003343_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Spa_g06637 | |
| Cluster | HCCA: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aob_g18441 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0052.g031601 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g17074 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g32123 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.23G039300.1 | Ceric.23G039300 | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Cre02.g083950 | No alias | Protein biosynthesis.organelle translation... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g56473 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.06 | OrthoFinder output from all 47 species | |
| Nbi_g11760 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.05 | OrthoFinder output from all 47 species | |
| Pir_g18227 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g18636 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g39979 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g11701 | No alias | component *(cS23) of small plastid ribosomal-subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041019_P001 | Zm00001e041019 | component psPSRP3 of small ribosomal subunit proteome | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006520 | amino acid metabolic process | IEP | HCCA |
| MF | GO:0016874 | ligase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006924 | Ribosomal_PSRP3/Ycf65 | 737 | 783 |
| No external refs found! |
