Spa_g07343

Description : component *(uL29) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0000495 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000495_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g07343
Cluster	HCCA: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00034p00044200	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
AT2G39390	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from all 47 species
AT3G09500	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from all 47 species
AT5G02610	No alias	Ribosomal L29 family protein	0.04	OrthoFinder output from all 47 species
Adi_g042799	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g129877	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g18235	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g07681	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g23213	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0437.g069964	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.39G045700.1	Ceric.39G045700	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.79	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.02	OrthoFinder output from all 47 species
Cre14.g617900	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dac_g01910	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g04430	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g40454	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01005972001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
GSVIVT01025050001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_33813	No alias	component RPL35 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Len_g05873	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g35530	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Mp6g05620.1	No alias	component RPL35 of LSU proteome component	0.07	OrthoFinder output from all 47 species
Msp_g28058	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g05063	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Nbi_g15763	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c13_5200V3.1	Pp3c13_5200	Ribosomal L29 family protein	0.03	OrthoFinder output from all 47 species
Pp3c3_2800V3.1	Pp3c3_2800	Ribosomal L29 family protein	0.02	OrthoFinder output from all 47 species
Ppi_g20361	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g05972	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g37983	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo419858	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Smo438324	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Smo79331	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc04g010240.3.1	Solyc04g010240	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g07344	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g27506	No alias	component *(uL29) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e008428_P002	Zm00001e008428	component RPL35 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Zm00001e014607_P001	Zm00001e014607	component RPL35 of LSU proteome component	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006914	autophagy	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0061919	process utilizing autophagic mechanism	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001854	Ribosomal_L29/L35	8	63

External Links

No external refs found!

Spa_g07343

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation