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  5. Spa_g07664

Spa_g07664


Description : component *(ARRS1) of ARPF2-ARRS1 complex & original description: none


Gene families : OG0004436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g07664

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00122560 evm_27.TU.AmTr_v1... Ribosome biogenesis regulatory protein homolog... 0.04 OrthoFinder output from all 47 species
Adi_g025010 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Adi_g129719 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g06676 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene09711.t1 Aspi01Gene09711 component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G016900.1 Ceric.12G016900 component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.03 OrthoFinder output from all 47 species
Cre01.g020950 No alias Ribosome biogenesis regulatory protein homolog... 0.04 OrthoFinder output from all 47 species
Dac_g03666 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.04 OrthoFinder output from all 47 species
Dcu_g12128 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01027072001 No alias Ribosome biogenesis regulatory protein homolog... 0.02 OrthoFinder output from all 47 species
Mp1g07840.1 No alias component ARRS1 of ARPF2-ARRS1 complex 0.03 OrthoFinder output from all 47 species
Sam_g29092 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g32071 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.06 OrthoFinder output from all 47 species
Zm00001e016688_P001 Zm00001e016688 component ARRS1 of ARPF2-ARRS1 complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 11 171
No external refs found!