Spa_g08998 (MOS7)


Aliases : MOS7

Description : scaffold nucleoporin of nuclear pore complex *(NUP88) & original description: none


Gene families : OG0005687 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005687_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g08998

Target Alias Description ECC score Gene Family Method Actions
Aev_g06067 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.02 OrthoFinder output from all 47 species
Dcu_g13196 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species
Gb_36996 MOS7 NUP88 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Gb_40785 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_40787 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os04g51900.1 MOS7, LOC_Os04g51900 NUP88 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Lfl_g07973 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species
Sam_g08414 No alias scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species
Solyc11g008110.1.1 MOS7, Solyc11g008110 NUP88 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Tin_g10176 MOS7 scaffold nucleoporin of nuclear pore complex *(NUP88) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019321 Nucleoporin_Nup88 4 199
IPR019321 Nucleoporin_Nup88 460 806
No external refs found!