Spa_g09457

Description : heavy chain of clathrin triskelion & original description: none

Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Spa_g09457
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011980	No alias	heavy chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086303	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g20290	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g12409	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Als_g14456	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g27949	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000042.11	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.01	OrthoFinder output from all 47 species
LOC_Os11g01380.1	LOC_Os11g01380	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
LOC_Os12g01390.1	LOC_Os12g01390	heavy chain of clathrin triskelion	0.04	OrthoFinder output from all 47 species
Lfl_g03514	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
MA_47260g0010	No alias	Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Nbi_g03873	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g13635	No alias	heavy chain of clathrin triskelion & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g29284	No alias	heavy chain of clathrin triskelion & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g11622	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Solyc06g051310.3.1	Solyc06g051310	heavy chain of clathrin triskelion	0.03	OrthoFinder output from all 47 species
Spa_g17793	No alias	heavy chain of clathrin triskelion & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e009296_P003	Zm00001e009296	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e020822_P001	Zm00001e020822	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e023940_P002	Zm00001e023940	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species
Zm00001e039167_P001	Zm00001e039167	heavy chain of clathrin triskelion	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
MF	GO:0031267	small GTPase binding	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
MF	GO:0051020	GTPase binding	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015348	Clathrin_H-chain_linker_core	346	367
IPR000547	Clathrin_H-chain/VPS_repeat	850	975
IPR000547	Clathrin_H-chain/VPS_repeat	1292	1431
IPR000547	Clathrin_H-chain/VPS_repeat	993	1133
IPR000547	Clathrin_H-chain/VPS_repeat	1437	1579
IPR000547	Clathrin_H-chain/VPS_repeat	557	692
IPR000547	Clathrin_H-chain/VPS_repeat	701	839
IPR000547	Clathrin_H-chain/VPS_repeat	1144	1281
IPR022365	Clathrin_H-chain_propeller_rpt	156	197
IPR022365	Clathrin_H-chain_propeller_rpt	20	55

External Links

No external refs found!

Spa_g09457

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation