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  5. Spa_g09674

Spa_g09674 (AtLa1, La1)


Aliases : AtLa1, La1

Description : nascent RNA chaperone *(LA) & original description: none


Gene families : OG0003172 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003172_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g09674

Target Alias Description ECC score Gene Family Method Actions
AT4G32720 AtLa1, La1 La protein 1 0.07 OrthoFinder output from all 47 species
Adi_g012248 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11405 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g01557 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11426 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.26G010200.1 AtLa1, La1,... nascent RNA chaperone *(LA) & original description:... 0.08 OrthoFinder output from all 47 species
Dac_g09267 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g07377 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11687 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.02 OrthoFinder output from all 47 species
MA_697179g0010 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.02 OrthoFinder output from all 47 species
MA_78251g0010 AtLa1, La1 La protein 1 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
Mp1g04820.1 AtLa1, La1 RNA chaperone (LA). rRNA chaperone (IRP2) 0.04 OrthoFinder output from all 47 species
Msp_g00656 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014583 AtLa1, La1 nascent RNA chaperone *(LA) & original description: CDS=169-1488 0.04 OrthoFinder output from all 47 species
Sam_g10339 No alias nascent RNA chaperone *(LA) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g10340 No alias nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g068310.3.1 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species
Tin_g31164 AtLa1, La1 nascent RNA chaperone *(LA) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e015074_P001 AtLa1, La1,... RNA chaperone (LA). rRNA chaperone (IRP2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 13 83
IPR014886 La_xRRM 275 367
No external refs found!