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  5. Spa_g09700

Spa_g09700


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g09700

Target Alias Description ECC score Gene Family Method Actions
AT1G14200 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g01231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g03172 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08904 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G002100.1 Ceric.14G002100 not classified & original description: pacid=50633322... 0.06 OrthoFinder output from all 47 species
Ceric.14G083100.1 Ceric.14G083100 not classified & original description: pacid=50633279... 0.04 OrthoFinder output from all 47 species
Dcu_g09533 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g23378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g27311 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g44240.1 LOC_Os01g44240 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g03317 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Lfl_g05536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_433917g0010 RHC1A Probable E3 ubiquitin-protein ligase RHC1A... 0.05 OrthoFinder output from all 47 species
Mp3g17850.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.01 OrthoFinder output from all 47 species
Msp_g14693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55440 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56162 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146 No alias not classified & original description: CDS=1-969 0.02 OrthoFinder output from all 47 species
Sam_g17099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g007895.1.1 Solyc05g007895 E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 294 336
IPR039525 RNF126-like_zinc-ribbon 10 40
No external refs found!