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  5. Spa_g09904

Spa_g09904


Description : proline-tRNA ligase & original description: none


Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g09904

Target Alias Description ECC score Gene Family Method Actions
AT3G62120 No alias Class II aaRS and biotin synthetases superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g010533 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01186 OVA6, PRORS1 proline-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g05302 No alias proline-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Als_g01002 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11327 No alias proline-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g56664 No alias proline-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Cre10.g429100 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Dcu_g02781 No alias proline-tRNA ligase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01028250001 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
LOC_Os12g25710.1 LOC_Os12g25710 proline-tRNA ligase 0.04 OrthoFinder output from all 47 species
Mp2g25470.1 No alias proline-tRNA ligase 0.04 OrthoFinder output from all 47 species
Nbi_g12513 No alias proline-tRNA ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06498 No alias proline-tRNA ligase & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g068320.3.1 Solyc06g068320 proline-tRNA ligase 0.05 OrthoFinder output from all 47 species
Tin_g15505 No alias proline-tRNA ligase & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e007170_P001 Zm00001e007170 proline-tRNA ligase 0.03 OrthoFinder output from all 47 species
Zm00001e024670_P003 Zm00001e024670 proline-tRNA ligase 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004827 proline-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006433 prolyl-tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006547 histidine metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002314 aa-tRNA-synt_IIb 154 320
IPR016061 Pro-tRNA_ligase_II_C 462 535
IPR004154 Anticodon-bd 339 432
No external refs found!