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  5. Spa_g10425

Spa_g10425 (ATERF4, RAP2.5, ATERF-4, ERF4)


Aliases : ATERF4, RAP2.5, ATERF-4, ERF4

Description : subgroup ERF-VIII transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g10425
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00084540 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Dac_g15005 CRF3 subgroup ERF-VI transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g00794 ORA47 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16100 No alias subgroup ERF-X transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17033 No alias subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Lfl_g28894 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
MA_84578g0010 HRE1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Nbi_g11606 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.03 OrthoFinder output from all 47 species
Pir_g55167 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ppi_g56408 DREB26 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g076380.2.1 DREB19, Solyc10g076380 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 26 74
No external refs found!