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  5. Spa_g11550

Spa_g11550 (CAB4, LHCA4)


Aliases : CAB4, LHCA4

Description : component *(LHCa4) of LHC-I complex & original description: none


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g11550
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00264770 CAB4, LHCA4,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 OrthoFinder output from all 47 species
AMTR_s00013p00180670 LHCA2,... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.04 OrthoFinder output from all 47 species
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.03 OrthoFinder output from all 47 species
Adi_g001938 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11618 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g02952 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08832 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g17797 LHCA2*1, LHCA6 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01073 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g21835 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g21836 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene44141.t1 LHCA2, Aspi01Gene44141 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56262.t1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06305 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G094100.1 LHCA2, Ceric.12G094100 not classified & original description: pacid=50600668... 0.02 OrthoFinder output from all 47 species
Ceric.33G037200.1 CAB4, LHCA4,... component *(LHCa4) of LHC-I complex & original... 0.04 OrthoFinder output from all 47 species
Cre06.g272650 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Cre06.g278213 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Cre10.g425900 CAB4, LHCA4 Chlorophyll a-b binding protein 4, chloroplastic... 0.02 OrthoFinder output from all 47 species
Cre10.g452050 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Cre16.g687900 LHCA5 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Dac_g04958 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g08113 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03606 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Len_g55433 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g41192 CAB4, LHCA4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_65346g0010 CAB4, LHCA4 Chlorophyll a-b binding protein P4, chloroplastic... 0.03 OrthoFinder output from all 47 species
Mp3g07840.1 CAB4, LHCA4 component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Mp8g13180.1 LHCA2 component LHCa2 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Msp_g12268 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07229 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16925 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g43266 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43267 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c20_23240V3.1 LHCA2, Pp3c20_23240 photosystem I light harvesting complex gene 2 0.02 OrthoFinder output from all 47 species
Sam_g16961 No alias component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Smo270427 CAB4, LHCA4 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 OrthoFinder output from all 47 species
Smo446130 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 OrthoFinder output from all 47 species
Solyc03g115900.4.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Solyc06g069730.3.1 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Spa_g16233 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07098 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 62 221
No external refs found!