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  5. Spa_g12145

Spa_g12145 (ATPCNA1, PCNA1)


Aliases : ATPCNA1, PCNA1

Description : sliding clamp protein *(PCNA) & original description: none


Gene families : OG0002250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12145

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00259890 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00029p00198200 ATPCNA1, PCNA1,... Cell cycle.interphase.DNA... 0.05 OrthoFinder output from all 47 species
AT1G07370 ATPCNA1, PCNA1 proliferating cellular nuclear antigen 1 0.03 OrthoFinder output from all 47 species
Adi_g020149 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05666 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07143 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g50349 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g11632 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene47926.t1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09705 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G042200.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.27G045300.1 ATPCNA1, PCNA1,... sliding clamp protein *(PCNA) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.141 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021319.67 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.04 OrthoFinder output from all 47 species
Cre12.g515850 ATPCNA1, PCNA1 Cell cycle.interphase.DNA... 0.06 OrthoFinder output from all 47 species
Dac_g03057 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.09 OrthoFinder output from all 47 species
GSVIVT01024815001 PCNA2, ATPCNA2 Cell cycle.interphase.DNA... 0.12 OrthoFinder output from all 47 species
Gb_11143 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.08 OrthoFinder output from all 47 species
LOC_Os02g56130.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.06 OrthoFinder output from all 47 species
Len_g11664 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g30418 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.05 OrthoFinder output from all 47 species
MA_83835g0010 ATPCNA1, PCNA1 sliding clamp protein (PCNA) 0.06 OrthoFinder output from all 47 species
Msp_g09130 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.11 OrthoFinder output from all 47 species
Nbi_g07886 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.06 OrthoFinder output from all 47 species
Pp3c4_11630V3.1 ATPCNA1, PCNA1,... proliferating cellular nuclear antigen 1 0.01 OrthoFinder output from all 47 species
Ppi_g04268 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g26451 No alias sliding clamp protein *(PCNA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc06g076660.3.1 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.05 OrthoFinder output from all 47 species
Tin_g12734 ATPCNA1, PCNA1 sliding clamp protein *(PCNA) & original description: none 0.11 OrthoFinder output from all 47 species
Zm00001e016159_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.05 OrthoFinder output from all 47 species
Zm00001e023660_P001 PCNA2, ATPCNA2,... sliding clamp protein (PCNA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006275 regulation of DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR022648 Pr_cel_nuc_antig_N 1 125
IPR022649 Pr_cel_nuc_antig_C 127 254
No external refs found!