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  5. Spa_g12359

Spa_g12359 (ATVPS54, VPS54)


Aliases : ATVPS54, VPS54

Description : GARP-specific component *(VPS54) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes & original description: none


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12359

Target Alias Description ECC score Gene Family Method Actions
Mp5g13080.1 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Ppi_g03262 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP HCCA
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 882 1013
IPR019515 VPS54_N 204 395
No external refs found!