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  5. Spa_g12386

Spa_g12386 (AtTOP3alpha, TOP3A)


Aliases : AtTOP3alpha, TOP3A

Description : topoisomerase component *(TOP3-alpha) of RTR Holliday junction dissolution complex & original description: none


Gene families : OG0002141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12386

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00164560 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT2G32000 No alias DNA topoisomerase, type IA, core 0.02 OrthoFinder output from all 47 species
Adi_g116169 AtTOP3alpha, TOP3A topoisomerase component *(TOP3-alpha) of RTR Holliday... 0.02 OrthoFinder output from all 47 species
Als_g10803 AtTOP3alpha, TOP3A topoisomerase component *(TOP3-alpha) of RTR Holliday... 0.03 OrthoFinder output from all 47 species
Len_g21283 No alias type-1A topoisomerase TOP3b & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR013497 Topo_IA_cen 179 595
IPR010666 Znf_GRF 784 822
IPR006171 TOPRIM_domain 16 159
No external refs found!