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  5. Spa_g12742

Spa_g12742


Description : subunit delta *(CCT4) of CCT chaperonin folding complex & original description: none


Gene families : OG0005270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005270_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g12742

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00145050 evm_27.TU.AmTr_v1... Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.04 OrthoFinder output from all 47 species
AT3G18190 No alias TCP-1/cpn60 chaperonin family protein 0.05 OrthoFinder output from all 47 species
Ala_g31751 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.04 OrthoFinder output from all 47 species
Aop_g04361 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.1 OrthoFinder output from all 47 species
Aspi01Gene37287.t1 Aspi01Gene37287 subunit delta *(CCT4) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Cba_g04618 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.04 OrthoFinder output from all 47 species
Ceric.29G021200.1 Ceric.29G021200 subunit delta *(CCT4) of CCT chaperonin folding complex... 0.05 OrthoFinder output from all 47 species
Cre05.g234639 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder output from all 47 species
Dac_g14277 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.05 OrthoFinder output from all 47 species
Dcu_g03883 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01008363001 No alias Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.03 OrthoFinder output from all 47 species
Gb_12950 No alias CCT4 subunit delta of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species
LOC_Os02g22780.1 LOC_Os02g22780 CCT4 subunit delta of CCT chaperonin folding complex 0.04 OrthoFinder output from all 47 species
Len_g04768 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.02 OrthoFinder output from all 47 species
MA_18588g0010 No alias CCT4 subunit delta of CCT chaperonin folding complex 0.05 OrthoFinder output from all 47 species
Mp6g14150.1 No alias CCT4 subunit delta of CCT chaperonin folding complex 0.02 OrthoFinder output from all 47 species
Pir_g04542 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.03 OrthoFinder output from all 47 species
Pnu_g13623 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.04 OrthoFinder output from all 47 species
Sam_g12483 No alias subunit delta *(CCT4) of CCT chaperonin folding complex... 0.02 OrthoFinder output from all 47 species
Solyc03g118910.1.1 Solyc03g118910 CCT4 subunit delta of CCT chaperonin folding complex 0.07 OrthoFinder output from all 47 species
Zm00001e000128_P002 Zm00001e000128 CCT4 subunit delta of CCT chaperonin folding complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 33 527
No external refs found!