Spa_g15666


Description : not classified & original description: none


Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g15666
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00149950 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Adi_g056846 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.28G050700.1 Ceric.28G050700 not classified & original description: pacid=50570551... 0.04 OrthoFinder output from all 47 species
Dac_g32150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017719001 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Len_g02379 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g11020.1 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Pir_g66303 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g30132 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g16562 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo142751 No alias DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 573 689
IPR011545 DEAD/DEAH_box_helicase_dom 352 525
No external refs found!