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  5. Spa_g16769

Spa_g16769


Description : component *(uL1c) of large plastid ribosomal-subunit proteome & original description: none


Gene families : OG0002232 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002232_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g16769

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00035950 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
AT3G63490 No alias Ribosomal protein L1p/L10e family 0.03 OrthoFinder output from all 47 species
Adi_g083284 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aev_g11306 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ala_g13358 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Als_g06949 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aob_g31675 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aop_g11179 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Azfi_s0065.g035757 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Cba_g25894 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ceric.36G042400.1 Ceric.36G042400 component *(uL1c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Dac_g00779 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Dcu_g06155 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dde_g12366 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01032196001 No alias Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
Gb_16169 No alias component psRPL1 of large ribosomal subunit proteome 0.08 OrthoFinder output from all 47 species
LOC_Os05g32220.1 LOC_Os05g32220 component psRPL1 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Len_g24587 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Lfl_g03897 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Lfl_g19309 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
MA_10002614g0010 No alias 50S ribosomal protein L1, chloroplastic OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
MA_310797g0010 No alias 50S ribosomal protein L1, chloroplastic OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g07500.1 No alias component psRPL1 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Msp_g12689 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Nbi_g11958 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g28354 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Pir_g01275 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pp3c23_11170V3.1 Pp3c23_11170 Ribosomal protein L1p/L10e family 0.01 OrthoFinder output from all 47 species
Ppi_g41124 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023589 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sam_g18339 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Smo143134 No alias Protein biosynthesis.organelle translation... 0.09 OrthoFinder output from all 47 species
Tin_g00638 No alias component *(uL1c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Zm00001e031570_P001 Zm00001e031570 component psRPL1 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
BP GO:0017038 protein import IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 202 392
No external refs found!