Spa_g18513


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g18513

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 OrthoFinder output from all 47 species
AT1G13410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G03800 emb1899, EMB175, EMB166 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003810 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005606 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g025356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g047336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g079794 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117068 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49640 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06921 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08067 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09699 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11078 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g11484 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12452 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g13294 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16037 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24222 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24375 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g24393 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g24397 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25320 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30597 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g30900 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g31201 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35633 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36178 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06797 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g07079 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g33154 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g40045 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16794 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16820 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17678 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23985 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g24180 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28312 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28710 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g61630 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02312.t1 Aspi01Gene02312 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene03951.t1 Aspi01Gene03951 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene23085.t1 Aspi01Gene23085 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27915.t1 Aspi01Gene27915 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56180.t1 EMB2758, Aspi01Gene56180 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69211.t1 Aspi01Gene69211 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0082.g038719 No alias not classified & original description: CDS=1-2307 0.04 OrthoFinder output from all 47 species
Azfi_s0095.g043616 No alias not classified & original description: CDS=1-3288 0.03 OrthoFinder output from all 47 species
Azfi_s0127.g048736 No alias not classified & original description: CDS=1-3153 0.04 OrthoFinder output from all 47 species
Azfi_s0168.g054598 No alias not classified & original description: CDS=1-1869 0.02 OrthoFinder output from all 47 species
Azfi_s0223.g058847 CRR22 not classified & original description: CDS=1-1773 0.04 OrthoFinder output from all 47 species
Cba_g29958 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67785 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g76621 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G078900.1 Ceric.04G078900 not classified & original description: pacid=50631863... 0.03 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.04 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.04 OrthoFinder output from all 47 species
Ceric.10G028200.1 Ceric.10G028200 ssDNA-binding protein *(OSB) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.10G063700.1 Ceric.10G063700 not classified & original description: pacid=50612924... 0.04 OrthoFinder output from all 47 species
Ceric.13G015700.1 Ceric.13G015700 not classified & original description: pacid=50636078... 0.04 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.04 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.04 OrthoFinder output from all 47 species
Ceric.21G051400.1 VAC1, ECB2,... not classified & original description: pacid=50603510... 0.04 OrthoFinder output from all 47 species
Ceric.22G042200.1 Ceric.22G042200 not classified & original description: pacid=50614742... 0.04 OrthoFinder output from all 47 species
Ceric.24G026700.1 Ceric.24G026700 not classified & original description: pacid=50628649... 0.04 OrthoFinder output from all 47 species
Ceric.24G028500.1 Ceric.24G028500 not classified & original description: pacid=50629587... 0.04 OrthoFinder output from all 47 species
Ceric.28G062700.1 Ceric.28G062700 not classified & original description: pacid=50570794... 0.04 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.04 OrthoFinder output from all 47 species
Ceric.37G004200.1 Ceric.37G004200 not classified & original description: pacid=50616137... 0.04 OrthoFinder output from all 47 species
Ceric.37G053600.1 Ceric.37G053600 not classified & original description: pacid=50616731... 0.04 OrthoFinder output from all 47 species
Dac_g15083 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g22525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40230 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08906 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g21425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47902 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04874 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g16087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19602 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22631 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g26387 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g31261 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g49917 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50255 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50888 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
LOC_Os12g06070.1 LOC_Os12g06070 Pentatricopeptide repeat-containing protein At5g04780,... 0.03 OrthoFinder output from all 47 species
Len_g05355 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05415 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g09617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g13067 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g19023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g29296 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_109134g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Msp_g01336 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g05630 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06496 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14968 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g21437 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g27069 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33823 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41204 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45004 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46091 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g20197 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g30564 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38771 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g03043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23954 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40050 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43611 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02766 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18671 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g41187 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g49137 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g60411 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g61912 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g03469 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15155 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15703 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30997 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04648 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g09778 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17744 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g18893 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g33094 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g42323 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g43570 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53969 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56901 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.02 OrthoFinder output from all 47 species
Sam_g12389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40709 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo125795 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Solyc05g023900.1.1 Solyc05g023900 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Spa_g06686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08793 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16630 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23914 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41043 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41901 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g57231 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g04707 OTP84 ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06116 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06670 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13065 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g14010 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17467 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g17626 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17737 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17746 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g22809 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23085 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g24546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26900 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31206 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31399 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g34886 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g40280 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g43987 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e039026_P001 OTP82, Zm00001e039026 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 108 130
IPR002885 Pentatricopeptide_repeat 6 26
IPR002885 Pentatricopeptide_repeat 134 180
IPR002885 Pentatricopeptide_repeat 234 282
IPR002885 Pentatricopeptide_repeat 32 77
No external refs found!