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  5. Spa_g19054

Spa_g19054


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g19054

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.04 OrthoFinder output from all 47 species
Adi_g026401 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g101344 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g07982 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g03960 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07774 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13233 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13621 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g16609 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20034 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21679 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g23933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g26367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34624 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35630 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35759 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36532 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g38943 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07454 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13524 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03233 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20910 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23798 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28414 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36004 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68471 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70449 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28263.t1 CRR22, Aspi01Gene28263 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34532.t1 Aspi01Gene34532 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54997.t1 CRK8, Aspi01Gene54997 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58644.t1 Aspi01Gene58644 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.05 OrthoFinder output from all 47 species
Cba_g06576 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19771 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20724 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.13G062400.1 Ceric.13G062400 not classified & original description: pacid=50636814... 0.04 OrthoFinder output from all 47 species
Ceric.14G074100.1 Ceric.14G074100 not classified & original description: pacid=50633188... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g22002 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05754 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06376 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g07093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08264 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08279 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08876 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08966 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g10377 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16553 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g26044 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g35962 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g36116 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g39841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40896 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40976 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g43330 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45932 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47933 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g01560 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09826 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10204 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g16093 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21688 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22994 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g23282 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23517 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g24358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25445 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g26325 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g38510 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g49752 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01033863001 No alias RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
Gb_05554 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Gb_11688 CRR2 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Gb_12832 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_14172 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_14867 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Gb_18166 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_33210 OTP84 RNA editing factor (OTP82) 0.06 OrthoFinder output from all 47 species
Gb_33411 EMB2261 Pentatricopeptide repeat-containing protein At2g27610... 0.03 OrthoFinder output from all 47 species
Gb_38680 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_39402 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Len_g03710 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g10383 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12108 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g12996 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17754 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18565 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18585 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18593 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18996 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g19018 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23907 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g41147 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54484 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54496 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07048 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_935792g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Msp_g02751 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g08826 OTP84 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g17470 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g22779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28092 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g28794 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41230 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g04943 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g05898 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06702 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08298 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g13423 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g16471 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g20199 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g23638 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g29119 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39306 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02988 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g13293 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35704 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40050 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40943 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g45078 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g51837 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57366 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04226 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30301 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03245 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05062 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07605 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14215 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14303 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g14464 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g17845 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g33573 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53555 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g54649 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59327 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g63206 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002051 REME1 not classified & original description: CDS=1-1467 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005911 EMB2758 not classified & original description: CDS=1-2163 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0029.g010124 No alias ssDNA-binding protein *(OSB) & original description: CDS=208-2547 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015808 No alias EC_2.5 transferase transferring alkyl or aryl group,... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0215.g026034 OTP84 not classified & original description: CDS=2081-4369 0.02 OrthoFinder output from all 47 species
Sam_g08403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g19460 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g28579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g33706 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo11063 REME1 Pentatricopeptide repeat-containing protein At2g34400... 0.03 OrthoFinder output from all 47 species
Smo136134 EMB2261 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Smo26993 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
Smo96499 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 OrthoFinder output from all 47 species
Solyc01g095690.2.1 Solyc01g095690 Pentatricopeptide repeat-containing protein At4g01030,... 0.06 OrthoFinder output from all 47 species
Spa_g06334 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g44799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g56457 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 208 232
IPR002885 Pentatricopeptide_repeat 786 807
IPR002885 Pentatricopeptide_repeat 611 641
IPR002885 Pentatricopeptide_repeat 329 389
IPR032867 DYW_dom 925 1015
IPR002885 Pentatricopeptide_repeat 407 453
IPR002885 Pentatricopeptide_repeat 710 756
IPR002885 Pentatricopeptide_repeat 507 555
IPR046848 E_motif 827 889
IPR046849 Eplus_motif 894 918
No external refs found!