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  5. Spa_g19950

Spa_g19950


Description : E3 ubiquitin ligase *(RMA/MUSE) & original description: none


Gene families : OG0000266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000266_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g19950

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00264430 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
AMTR_s00024p00165910 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G74990 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g012747 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09554 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07901 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16158 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g35414 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0043.g027095 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G009800.1 Ceric.10G009800 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.18G044800.1 RMA3, ATRMA3,... E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.18G044900.1 Ceric.18G044900 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.18G045400.1 Ceric.18G045400 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.18G045500.1 Ceric.18G045500 E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000545.1 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g20634 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g11588 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g10924 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59221 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430069g0010 No alias RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Nbi_g28831 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g23747 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c10_17530V3.1 Pp3c10_17530 RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g62388 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017142 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description:... 0.03 OrthoFinder output from all 47 species
Sam_g45037 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g109340.4.1 Solyc01g109340 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc02g089870.3.1 Solyc02g089870 RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc07g054080.3.1 RMA1, ATRMA1,... RING-HC-class E3 ligase 0.03 OrthoFinder output from all 47 species
Spa_g41039 No alias E3 ubiquitin ligase *(RMA/MUSE) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 38 78
No external refs found!