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  5. Spa_g21639

Spa_g21639


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g21639

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g059149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13552 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19163 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g16236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31601 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g04644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g45356 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_68291g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Nbi_g12149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Tin_g20205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024336_P003 Zm00001e024336 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e024934_P002 Zm00001e024934 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 265 334
IPR000504 RRM_dom 175 242
No external refs found!