Spa_g23950


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g23950

Target Alias Description ECC score Gene Family Method Actions
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G43790 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009247 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g099198 MEF19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g099295 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06320 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g39563 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06396 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30566 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30627 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32467 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene20358.t1 Aspi01Gene20358 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66850.t1 Aspi01Gene66850 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19224 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g20102 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45939 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G081600.1 Ceric.16G081600 not classified & original description: pacid=50589725... 0.05 OrthoFinder output from all 47 species
Ceric.26G001100.1 Ceric.26G001100 not classified & original description: pacid=50598974... 0.05 OrthoFinder output from all 47 species
Dac_g22836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g05785 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g18185 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g19488 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g22711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g38451 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g46557 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g64370.1 LOC_Os03g64370 Pentatricopeptide repeat-containing protein At5g52850,... 0.03 OrthoFinder output from all 47 species
LOC_Os08g05750.1 LOC_Os08g05750 Pentatricopeptide repeat-containing protein At4g16835,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g42610.1 OTP81, LOC_Os08g42610 Pentatricopeptide repeat-containing protein At2g29760,... 0.07 OrthoFinder output from all 47 species
Len_g54973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23112 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34200 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39079 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g39535 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41092 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g37388 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g19965 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g12921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g22228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16575 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g40203 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.04 OrthoFinder output from all 47 species
Solyc09g015370.1.1 Solyc09g015370 Pentatricopeptide repeat-containing protein At2g27610... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 21 68
IPR002885 Pentatricopeptide_repeat 123 170
IPR002885 Pentatricopeptide_repeat 227 273
No external refs found!