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  5. Spa_g25236

Spa_g25236


Description : component *(eS8) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0000906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g25236

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00155570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
AMTR_s00109p00031400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
AT5G20290 No alias Ribosomal protein S8e family protein 0.12 OrthoFinder output from all 47 species
Adi_g061825 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Adi_g126293 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Aev_g10713 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g00910 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ala_g04001 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g34365 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
Ala_g38098 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Als_g62935 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Aob_g07667 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Aop_g11567 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g23945 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g32909 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Aspi01Gene08566.t1 Aspi01Gene08566 component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aspi01Gene46059.t1 Aspi01Gene46059 component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.01G124400.1 Ceric.01G124400 component *(eS8) of small ribosomal-subunit (SSU)... 0.1 OrthoFinder output from all 47 species
Ceric.12G096700.1 Ceric.12G096700 component *(eS8) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.79 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Cre06.g272800 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder output from all 47 species
Dac_g03069 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dac_g14336 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dcu_g03556 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Dcu_g29644 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.08 OrthoFinder output from all 47 species
GSVIVT01006249001 No alias 40S ribosomal protein S8 OS=Zea mays 0.09 OrthoFinder output from all 47 species
GSVIVT01031566001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder output from all 47 species
GSVIVT01037763001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder output from all 47 species
Gb_28325 No alias component RPS8 of SSU proteome 0.09 OrthoFinder output from all 47 species
LOC_Os02g28810.1 LOC_Os02g28810 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.06 OrthoFinder output from all 47 species
LOC_Os04g28180.1 LOC_Os04g28180 component RPS8 of SSU proteome 0.13 OrthoFinder output from all 47 species
Len_g21245 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g05239 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10436736g0010 No alias 40S ribosomal protein S8 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
MA_14571g0010 No alias component RPS8 of SSU proteome 0.07 OrthoFinder output from all 47 species
MA_9738483g0010 No alias component RPS8 of SSU proteome 0.05 OrthoFinder output from all 47 species
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.12 OrthoFinder output from all 47 species
Msp_g01868 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Msp_g18199 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01823 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Pir_g02421 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pp3c13_20020V3.1 Pp3c13_20020 Ribosomal protein S8e family protein 0.08 OrthoFinder output from all 47 species
Pp3c19_6490V3.1 Pp3c19_6490 Ribosomal protein S8e family protein 0.04 OrthoFinder output from all 47 species
Pp3c4_11370V3.1 Pp3c4_11370 Ribosomal protein S8e family protein 0.04 OrthoFinder output from all 47 species
Ppi_g23733 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g27614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008597 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g15855 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g19629 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g27314 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Solyc06g007570.3.1 Solyc06g007570 component RPS8 of SSU proteome 0.1 OrthoFinder output from all 47 species
Solyc06g083180.4.1 Solyc06g083180 component RPS8 of SSU proteome 0.12 OrthoFinder output from all 47 species
Solyc07g065170.3.1 Solyc07g065170 component RPS8 of SSU proteome 0.07 OrthoFinder output from all 47 species
Solyc09g057650.3.1 Solyc09g057650 component RPS8 of SSU proteome 0.1 OrthoFinder output from all 47 species
Solyc10g006070.3.1 Solyc10g006070 component RPS8 of SSU proteome 0.08 OrthoFinder output from all 47 species
Spa_g44564 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g03723 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Tin_g09569 No alias component *(eS8) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e004092_P002 Zm00001e004092 component RPS8 of SSU proteome 0.08 OrthoFinder output from all 47 species
Zm00001e024995_P001 Zm00001e024995 component RPS8 of SSU proteome 0.16 OrthoFinder output from all 47 species
Zm00001e024996_P001 Zm00001e024996 component RPS8 of SSU proteome 0.08 OrthoFinder output from all 47 species
Zm00001e024999_P001 Zm00001e024999 component RPS8 of SSU proteome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 2 164
No external refs found!