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  5. Spa_g27577

Spa_g27577


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g27577
Cluster HCCA: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00155170 CRR2,... Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
AMTR_s00003p00032470 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.06 OrthoFinder output from all 47 species
AMTR_s00016p00166520 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
AMTR_s00126p00080460 OTP82,... Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
AMTR_s00130p00019530 DOT4,... Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g004268 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g009422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g050950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052414 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085794 OTP82 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g38690 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g49640 REME1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g02043 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04237 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06921 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13294 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g22711 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g32891 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35633 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05079 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06797 No alias ssDNA-binding protein *(OSB) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g06887 RARE1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06902 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07140 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08105 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15782 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19247 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g19283 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30874 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g62734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05074 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g07960 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g03193 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g03542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16820 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28638 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28710 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29357 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g29941 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31625 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36807 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g57040 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000466 No alias not classified & original description: CDS=1-1575 0.05 OrthoFinder output from all 47 species
Azfi_s0652.g081079 No alias not classified & original description: CDS=1-2169 0.08 OrthoFinder output from all 47 species
Cba_g07249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g36324 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g58730 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67712 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G054200.1 Ceric.02G054200 not classified & original description: pacid=50585961... 0.04 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.06 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.06 OrthoFinder output from all 47 species
Ceric.10G028200.1 Ceric.10G028200 ssDNA-binding protein *(OSB) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.18G049200.1 Ceric.18G049200 not classified & original description: pacid=50621468... 0.05 OrthoFinder output from all 47 species
Ceric.1Z242100.1 CRR22, Ceric.1Z242100 not classified & original description: pacid=50573437... 0.06 OrthoFinder output from all 47 species
Ceric.25G017200.1 VAC1, ECB2,... not classified & original description: pacid=50594284... 0.03 OrthoFinder output from all 47 species
Ceric.28G062700.1 Ceric.28G062700 not classified & original description: pacid=50570794... 0.05 OrthoFinder output from all 47 species
Ceric.29G051500.1 Ceric.29G051500 not classified & original description: pacid=50625217... 0.04 OrthoFinder output from all 47 species
Ceric.36G051900.1 Ceric.36G051900 not classified & original description: pacid=50568048... 0.05 OrthoFinder output from all 47 species
Ceric.37G053600.1 Ceric.37G053600 not classified & original description: pacid=50616731... 0.06 OrthoFinder output from all 47 species
Dac_g18760 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20347 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g20433 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22525 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06448 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g07693 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g08601 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08906 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g08937 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16957 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43298 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g47902 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g08457 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11340 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
GSVIVT01037258001 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.03 OrthoFinder output from all 47 species
Gb_21745 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g43430.2 LOC_Os04g43430 RNA editing factor (MEF12) 0.03 OrthoFinder output from all 47 species
LOC_Os05g12130.1 EMB2261, LOC_Os05g12130 RNA editing factor (ECD1) 0.02 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.02 OrthoFinder output from all 47 species
LOC_Os12g06070.1 LOC_Os12g06070 Pentatricopeptide repeat-containing protein At5g04780,... 0.04 OrthoFinder output from all 47 species
Lfl_g36746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_109134g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.07 OrthoFinder output from all 47 species
MA_43615g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Msp_g23168 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28796 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g33834 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34009 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g34031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35976 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46091 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48594 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g03331 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13480 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g46650 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57077 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63120 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000452 No alias not classified & original description: CDS=1-2067 0.04 OrthoFinder output from all 47 species
Sam_g16299 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo76411 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Solyc02g084830.4.1 Solyc02g084830 Pentatricopeptide repeat-containing protein At5g44230... 0.04 OrthoFinder output from all 47 species
Solyc04g064750.2.1 Solyc04g064750 RNA editing factor (MEF12). serine carboxypeptidase 0.03 OrthoFinder output from all 47 species
Solyc12g099850.1.1 Solyc12g099850 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Spa_g07089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23914 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g27690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g27799 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41901 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g53358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06449 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g07694 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g09151 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g32426 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g40280 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012422_P001 OSB1, Zm00001e012422 ssDNA-binding protein (OSB) 0.03 OrthoFinder output from all 47 species
Zm00001e013713_P001 Zm00001e013713 Pentatricopeptide repeat-containing protein At4g20770... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 141 199
IPR002885 Pentatricopeptide_repeat 96 123
IPR032867 DYW_dom 243 323
IPR002885 Pentatricopeptide_repeat 22 69
No external refs found!