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  5. Spa_g28120

Spa_g28120


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g28120
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Aev_g34933 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19430 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g20647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25155 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g25745 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g36549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37714 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g26442 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04000 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04440 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g06102 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08870 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g09609 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g11250 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16738 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16781 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g16841 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23983 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25536 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g26341 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28322 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28403 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g28495 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28699 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31523 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g31647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33300 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33370 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g33571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36004 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g36436 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g38034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g63229 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g67674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67878 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g67888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68087 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68090 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70213 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene61522.t1 OTP84, Aspi01Gene61522 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06988 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g03825 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g18724 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g40230 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g45106 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g16975 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g36057 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g03284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g03474 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g03915 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17695 EMB2758 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g17732 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25127 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g30376 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g40822 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g41084 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44401 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45471 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g46059 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46118 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g46329 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38613 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g38653 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g29502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g44175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g49579 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57464 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63505 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_4940V3.1 Pp3c17_4940 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g04704 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g08487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15635 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18166 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g43570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g46621 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53593 DOT4 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g56785 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56969 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61878 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g065410.3.1 CRR22, Solyc02g065410 Pentatricopeptide repeat-containing protein At1g20230... 0.05 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.05 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.04 OrthoFinder output from all 47 species
Solyc07g009220.2.1 Solyc07g009220 Pentatricopeptide repeat-containing protein At2g34400... 0.06 OrthoFinder output from all 47 species
Spa_g01958 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g08299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09909 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g10971 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g14257 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g17686 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g18928 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20184 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g20297 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21942 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g23061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23932 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26356 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g28110 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g41901 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g44754 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45306 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45594 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45637 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45659 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53142 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54465 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g55551 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g05231 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g13479 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g22109 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g26897 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 170 196
IPR046848 E_motif 215 264
IPR002885 Pentatricopeptide_repeat 1 40
IPR002885 Pentatricopeptide_repeat 96 143
No external refs found!