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  5. Spa_g28947

Spa_g28947 (PKR1, CHR4)


Aliases : PKR1, CHR4

Description : CHD3-type chromatin remodeling factor *(PKL/PKR) & original description: none


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g28947

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00058700 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
AMTR_s00086p00165640 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
AT5G44800 PKR1, CHR4 chromatin remodeling 4 0.02 OrthoFinder output from all 47 species
Adi_g011533 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g011986 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Adi_g012014 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Adi_g061147 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Adi_g078005 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g104730 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04898 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09087 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g13876 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Ala_g02726 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ala_g12634 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17670 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Als_g16533 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g14299 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Aob_g18236 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18378 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Aob_g29989 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Aop_g13607 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aspi01Gene14150.t1 CHR11, Aspi01Gene14150 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25758.t1 SYD, CHR3,... SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g64862 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G025400.1 PKL, GYM, CHR6,... not classified & original description: pacid=50572032... 0.03 OrthoFinder output from all 47 species
Ceric.1Z205000.1 PKR1, CHR4,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020825.19 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021275.25 CHR11 Probable chromatin-remodeling complex ATPase chain... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021623.13 PKL, GYM, CHR6,... RNA biosynthesis.transcriptional activation.PHD finger... 0.01 OrthoFinder output from all 47 species
Cre08.g377200 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.01 OrthoFinder output from all 47 species
Dcu_g02069 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Dcu_g07767 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Dde_g03505 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Dde_g10991 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
GSVIVT01012117001 PKR1, CHR4 RNA biosynthesis.transcriptional activation.PHD finger... 0.03 OrthoFinder output from all 47 species
GSVIVT01017791001 CHR17 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
GSVIVT01035901001 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_16961 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Gb_27153 ATCHR12 chromatin remodeling factor (Snf2) 0.02 OrthoFinder output from all 47 species
LOC_Os05g05230.1 ATCHR12, LOC_Os05g05230 chromatin remodeling factor (Snf2) 0.03 OrthoFinder output from all 47 species
LOC_Os07g31450.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Len_g01407 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Len_g11421 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g15195 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Len_g57697 PKL, GYM, CHR6,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16058 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
MA_10427196g0010 PKL, GYM, CHR6,... CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder output from all 47 species
Mp4g00040.1 PKR1, CHR4 chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Mp5g24460.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Msp_g14766 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g14786 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15707 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.03 OrthoFinder output from all 47 species
Ore_g10377 CHR17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g12901 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16130 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18340 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g18803 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ore_g25685 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.04 OrthoFinder output from all 47 species
Ore_g36640 PKL, GYM, CHR6,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g07018 PKR1, CHR4 CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Ppi_g05325 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.03 OrthoFinder output from all 47 species
Ppi_g13843 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32094 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Sam_g14615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16204 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Smo155996 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo177985 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo440203 CHR11 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Solyc01g067390.4.1 CHR11, Solyc01g067390 chromatin remodeling factor (Iswi) 0.03 OrthoFinder output from all 47 species
Solyc02g068560.3.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.04 OrthoFinder output from all 47 species
Solyc06g065730.3.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.03 OrthoFinder output from all 47 species
Tin_g08468 SYD, CHR3 SMARCA component *(SYD/BRM/MINU) & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e026331_P001 CHR17, Zm00001e026331 chromatin remodeling factor (Iswi) 0.02 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0140658 ATP-dependent chromatin remodeler activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR009463 DUF1087 1433 1473
IPR019787 Znf_PHD-finger 330 373
IPR001005 SANT/Myb 1839 1886
IPR023780 Chromo_domain 735 784
IPR001650 Helicase_C 1140 1252
IPR000330 SNF2_N 840 1115
No external refs found!