Spa_g39088


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g39088
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
Adi_g003865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005491 CRR2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g005721 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014859 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g018742 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g021650 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g034377 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g034437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060792 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g065511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g067968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g074661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082334 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g088362 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g101128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113395 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g25949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g30878 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g32458 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g35743 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g06378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30417 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g02020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03649 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g16849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23679 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g23956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g38453 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g68053 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000621 No alias ssDNA-binding protein *(OSB) & original description: CDS=97-654 0.05 OrthoFinder output from all 47 species
Cba_g04075 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05556 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g18613 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g21419 EMB2744 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g35061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67712 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75400 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g78717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g03825 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g09645 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g18967 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23537 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25289 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g32260 REME1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dac_g44414 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os01g66160.1 REME1, LOC_Os01g66160 Pentatricopeptide repeat-containing protein At2g03880,... 0.04 OrthoFinder output from all 47 species
Len_g03727 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g04309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g04818 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05397 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g11694 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12661 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g13061 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18040 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Len_g18261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18274 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18551 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18597 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g18598 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g25458 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g30844 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g34148 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g11341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g14089 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Msp_g14202 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17727 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17912 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Msp_g19449 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24971 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03803 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08399 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g15566 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g17487 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44325 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57359 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63641 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g63739 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63899 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g06887 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g22234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31582 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54672 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g61035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g025700.2.1 Solyc03g025700 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc09g015370.1.1 Solyc09g015370 Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Tin_g17315 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20961 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31642 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e033826_P001 Zm00001e033826 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 123 169
IPR002885 Pentatricopeptide_repeat 22 68
IPR002885 Pentatricopeptide_repeat 97 120
IPR046848 E_motif 241 273
No external refs found!