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  5. Spa_g40064

Spa_g40064 (BUM1, SHL, STM, WAM, WAM1, BUM)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g40064
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 KNAT3,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AT4G32040 KNAT5 KNOTTED1-like homeobox gene 5 0.03 OrthoFinder output from all 47 species
Ala_g05964 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05543 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30735.t1 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56442.t1 KNAT3, Aspi01Gene56442 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05224 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09456 KNAT3 KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01012897001 KNAT3 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
LOC_Os02g08544.1 KNAT3, LOC_Os02g08544 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os08g19650.1 KNAT3, LOC_Os08g19650 transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Ore_g29053 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18663 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026748 KNAT3 KNOX-type transcription factor & original description: CDS=1-885 0.05 OrthoFinder output from all 47 species
Sam_g36645 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc12g010410.3.1 KNAT4, Solyc12g010410 transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e005545_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e025100_P003 KNAT3, Zm00001e025100 transcription factor (KNOX) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
InterPro domains Description Start Stop
IPR005539 ELK_dom 347 367
IPR005541 KNOX2 245 287
IPR005540 KNOX1 188 228
IPR008422 Homeobox_KN_domain 386 425
No external refs found!